10 interactive concept widgets for Respiration in Plants. Drag any slider, change any number, and watch the formula and the answer update live. Built so you understand how each NEET problem actually works, not just the final number.
On this page
Click each part of the mitochondrion (outer membrane, intermembrane space, inner membrane, cristae, matrix, ATP synthase) and see which respiration step happens there.
Click each labelled part of the mitochondrion to see its structure, the respiration step that occurs there, and the NEET focus.
Mitochondrial matrix
The fluid-filled inner compartment enclosed by the inner membrane. Contains the soluble enzymes of the link reaction and Krebs cycle, mitochondrial DNA (circular), 70S ribosomes, and dissolved metabolites.
Respiration role: Site of the LINK REACTION (pyruvate → acetyl CoA) and the KREBS CYCLE (TCA cycle).
NEET focus: Two of the four respiration phases happen here. Mitochondrial DNA is circular and ribosomes are 70S, both prokaryotic features that support the endosymbiotic origin theory.
Where does each respiration step happen?
Glycolysis
Cytoplasm
Link reaction
Mitochondrial matrix
Krebs cycle
Mitochondrial matrix
ETC + ATP synthase
Inner mitochondrial membrane (cristae)
Try this
Step through all 10 reactions of glycolysis. See investment phase (-2 ATP), payoff phase (+4 ATP, +2 NADH), and the irreversible PFK committed step. Live cumulative ATP / NADH tracker.
Click each step to see what happens. Slide the cumulative ATP/NADH tracker to step through the pathway and see net yield grow.
Cumulative tracker: through step 10
Cumulative ATP
+2
(net so far)
Cumulative NADH
2
(per glucose)
1
2
3
4
5
6
7
8
9
10
investment
Enzyme: Hexokinase
Uses: 1 ATP
Glucose is phosphorylated using ATP. The phosphate "traps" glucose inside the cell (since phosphorylated glucose cannot diffuse out). Hexokinase is inhibited by its own product, glucose-6-P.
Net per glucose (full glycolysis)
ATP gross
+4
ATP used
-2
ATP NET
+2
NADH
+2
End products: 2 pyruvate (3C each) + 2 ATP (net) + 2 NADH per glucose. Pyruvate then enters the link reaction (aerobic) or fermentation (anaerobic).
NEET key facts
!
Glycolysis = EMP pathway (Embden-Meyerhof-Parnas). Site: cytoplasm. No O2 required.
!
Net per glucose: 2 ATP + 2 NADH + 2 pyruvate. (Gross 4 ATP - 2 invested = 2 net.)
!
Two substrate-level phosphorylations: at step 7 (1,3-BPG → 3-PGA) and step 10 (PEP → pyruvate).
!
Phosphofructokinase (PFK) at step 3 is the rate-limiting / committed step.
!
NADH is produced only at step 6 (G3P → 1,3-BPG; doubled for 2 G3P per glucose = 2 NADH).
Try this
Click each of the 8 Krebs cycle steps to see substrates, products, enzymes, and the per-step yield of NADH, FADH2, GTP/ATP, and CO2. Adjust turns to see per-glucose totals.
Click each of the 8 steps to see the substrate, product, enzyme, and what is produced. Adjust the turns slider (1 acetyl CoA = 1 turn; 1 glucose = 2 turns).
Condensation
Acetyl CoA (2C) + OAA (4C) → Citrate (6C)
2C + 4C → 6C
Enzyme: Citrate synthase
Produces: CoA released
The cycle starts when acetyl CoA combines with oxaloacetate (OAA) to form citrate. CoA is released and recycled. Citrate has three carboxyl groups, hence the alternative name "tricarboxylic acid (TCA) cycle".
Number of turns: 2 (per glucose; 2 acetyl CoA from 2 pyruvate)
Total output for 2 turns:
NADH
6
3 / turn
FADH2
2
1 / turn
GTP/ATP
2
1 / turn
CO2
4
2 / turn
NEET key facts
!
Site: mitochondrial matrix. Per turn: 3 NADH + 1 FADH2 + 1 GTP/ATP + 2 CO2.
!
Per glucose: 2 turns (because 1 glucose → 2 pyruvate → 2 acetyl CoA). Total: 6 NADH + 2 FADH2 + 2 GTP/ATP + 4 CO2.
!
Two oxidative decarboxylations: at step 3 (isocitrate → alpha-KG) and step 4 (alpha-KG → succinyl CoA). Both release CO2 and produce NADH.
!
The substrate-level phosphorylation step is at step 5: succinyl CoA → succinate (1 GTP/ATP).
!
Succinate dehydrogenase (step 6) is the only Krebs enzyme bound to the inner mitochondrial membrane. It is also Complex II of the ETC.
!
The cycle starts when acetyl CoA combines with OAA (citrate synthase, step 1) and ends when malate regenerates OAA (step 8).
Try this
See how electrons from NADH or FADH2 flow through Complex I → III → IV, pumping H+ to build the proton gradient. Watch ATP synthase use the gradient to make ATP. Toggle donor (NADH vs FADH2).
Toggle the electron donor (NADH vs FADH2) and click each complex to see its role. Watch the proton gradient build across the inner mitochondrial membrane and drive ATP synthase.
Electron donor:
Complex I: NADH dehydrogenase
Accepts electrons from NADH and passes them to ubiquinone (CoQ). Pumps 4 H+ from the matrix to the intermembrane space.
Input
NADH → NAD+ + H+ + 2e-
Output
CoQ → CoQH2 (reduced)
Pumps 4 H+ from matrix → intermembrane space
Per electron pair from NADH:
Total H+ pumped
10
4+4+2 (I+III+IV)
ATP yield (NCERT)
3
(theoretical max)
H2O produced
1
(at Complex IV)
NEET key facts
!
ETC site: inner mitochondrial membrane (cristae). Final electron acceptor: O2.
!
NADH enters at Complex I and yields 3 ATP (NCERT). FADH2 enters at Complex II and yields 2 ATP.
!
Mobile carriers: ubiquinone (CoQ) between Complex I/II and III; cytochrome c between Complex III and IV.
!
Protons are pumped at Complexes I, III, and IV. Complex II does NOT pump protons.
!
ATP is synthesised by ATP synthase (Complex V) on the matrix side as H+ flows back from intermembrane space.
!
The whole process is called oxidative phosphorylation (electron flow + ATP synthesis coupled by chemiosmosis, Peter Mitchell, Nobel 1978).
Try this
Toggle between yeast (alcoholic, 2-step, releases CO2) and muscles / Lactobacillus (lactic acid, 1-step, no CO2). See exactly how each pathway regenerates NAD+ for glycolysis.
Toggle between the two main types of fermentation. Both regenerate NAD+ for glycolysis, but the pyruvate fate is different. Yeast makes ethanol; muscles and Lactobacillus make lactate.
Alcoholic Fermentation
Organisms / cells: Yeast (Saccharomyces cerevisiae); some bacteria
End product: Ethanol (C2H5OH)
Byproducts: CO2 (released)
Step 1: Pyruvate (3C) → Acetaldehyde (2C)
Enzyme: Pyruvate decarboxylase
CO2 is released. Uses TPP (thiamine pyrophosphate, vitamin B1) as cofactor.
Step 2: Acetaldehyde (2C) → Ethanol (2C)
Enzyme: Alcohol dehydrogenase
Acetaldehyde is REDUCED by NADH (NADH → NAD+). This regenerates NAD+ so glycolysis can continue.
Real-life uses:
• Brewing (beer, wine): yeast ferments sugars → ethanol + CO2
• Baking: CO2 from yeast makes bread rise; ethanol evaporates during baking
• Bioethanol fuel from sugarcane, corn, etc.
Why fermentation? Why so little ATP?
Fermentation produces only 2 ATP per glucose (the same 2 ATP that glycolysis already produced). Compare with aerobic respiration: 38 ATP per glucose. So why bother with fermentation?
The point of fermentation is to regenerate NAD+. Glycolysis uses 2 NAD+ → 2 NADH per glucose. Without a way to recycle the NADH back to NAD+, glycolysis would stop (the NAD+ would run out). Fermentation oxidises the NADH back to NAD+ by donating its hydrogen to pyruvate (forming lactate) or to acetaldehyde (forming ethanol). So fermentation is essentially a "NAD+ recycling system" that lets glycolysis keep producing 2 ATP.
NEET key facts
!
Fermentation = anaerobic, partial breakdown of glucose. Site: cytoplasm. ATP yield: only 2 (from glycolysis).
!
Alcoholic: yeast (Saccharomyces). Pyruvate → acetaldehyde + CO2 (pyruvate decarboxylase) → ethanol (alcohol dehydrogenase).
!
Lactic acid: muscles (under O2 stress) and Lactobacillus. Pyruvate → lactate directly (lactate dehydrogenase, LDH). NO CO2 released.
!
Both pathways have the SAME purpose: regenerate NAD+ from NADH so glycolysis can continue.
!
NEET trap: alcoholic fermentation releases CO2 (used in bread, beer); lactic acid fermentation does NOT release CO2 (used in curd / yoghurt).
Try this
Side-by-side comparison across 12 features. Toggle between all features and the 4 NEET-key distinctions. See exactly why aerobic respiration produces 19x more ATP than fermentation.
A side-by-side comparison of aerobic respiration and anaerobic respiration / fermentation across 12 features. Toggle to highlight the NEET-favourite distinctions.
Feature
Aerobic respiration
Anaerobic / Fermentation
★Oxygen requirement
YES (O2 is the final electron acceptor)
NO oxygen used
★Site
Cytoplasm + mitochondria
Cytoplasm only
Stages involved
Glycolysis + Link reaction + Krebs cycle + ETC
Glycolysis + Fermentation only
★End product of glucose
CO2 + H2O (complete oxidation)
Ethanol + CO2 (yeast) OR Lactate (muscles, LAB)
★ATP yield per glucose
38 ATP (NCERT)
2 ATP (only from glycolysis)
Efficiency of glucose oxidation
Complete (~40% energy as ATP)
Incomplete (only a fraction of glucose energy released)
Final electron acceptor
O2 (forming H2O at Complex IV)
Pyruvate (forming lactate or ethanol)
CO2 release
6 CO2 per glucose (2 from link, 4 from Krebs)
2 CO2 (alcoholic) or 0 CO2 (lactic)
Krebs cycle / ETC?
Both run
Neither runs
Examples
Most plant and animal cells under O2
Yeast (Saccharomyces); Lactobacillus; muscle under O2 stress
NADH fate
Oxidised at Complex I of ETC → 3 ATP each
Oxidised by reducing pyruvate → no ATP, just NAD+ regenerated
RQ value
1.0 (carbohydrate substrate)
Infinity (CO2 produced but no O2 consumed)
Key takeaways
NEET key facts
!
Aerobic respiration: 38 ATP per glucose, requires O2, full oxidation, runs in cytoplasm + mitochondria.
!
Anaerobic / fermentation: 2 ATP per glucose, no O2, partial oxidation, runs only in cytoplasm.
!
Both share glycolysis (cytoplasm). The split happens at pyruvate.
!
Aerobic end products: CO2 + H2O. Anaerobic end products: ethanol + CO2 (yeast) OR lactate (muscles, LAB).
!
Anaerobic respiration also includes "true anaerobes" like methanogens, but in NEET context, anaerobic mostly = fermentation.
Try this
Toggle between aerobic (38 ATP) and fermentation (2 ATP). See where every ATP comes from: substrate-level vs oxidative phosphorylation. NCERT theoretical values used.
Toggle between aerobic respiration and fermentation. See exactly where each ATP comes from. NCERT theoretical values are used (NADH = 3 ATP, FADH2 = 2 ATP).
Stage-by-stage breakdown:
Glycolysis
Site: Cytoplasm
Net 2 ATP (substrate-level) + 2 NADH per glucose. Glucose → 2 pyruvate.
Link reaction
Site: Mitochondrial matrix
Per pyruvate: 1 NADH + 1 CO2. Per glucose (2 pyruvates): 2 NADH + 2 CO2. NO ATP directly.
Krebs cycle
Site: Mitochondrial matrix
Per turn: 3 NADH + 1 FADH2 + 1 GTP/ATP + 2 CO2. Per glucose (2 turns): 6 NADH + 2 FADH2 + 2 ATP + 4 CO2.
Electron Transport Chain (oxidative phosphorylation)
Site: inner mitochondrial membrane (cristae)
NADH (total)
10 × 3 ATP = 30 ATP
FADH2 (total)
2 × 2 ATP = 4 ATP
ETC subtotal: 34 ATP (from coenzymes via oxidative phosphorylation)
GRAND TOTAL ATP per glucose:
Substrate-level (direct)
4 ATP
Oxidative phosphorylation
34 ATP
TOTAL
38 ATP
Aerobic vs Fermentation comparison
Aerobic respiration
• 38 ATP per glucose (NCERT)
• Glucose fully oxidised → 6 CO2 + 6 H2O
• Requires O2 as final electron acceptor
• Cytoplasm + mitochondria
Fermentation
• Only 2 ATP per glucose
• Glucose only partially oxidised
• No O2 needed
• Cytoplasm only
NEET key facts
!
Aerobic glucose: 38 ATP. Fermentation: 2 ATP. The 19-fold difference is the reason aerobic respiration evolved.
!
NCERT: NADH = 3 ATP, FADH2 = 2 ATP. (Real biology: closer to 2.5 and 1.5 due to proton leak; NEET expects NCERT.)
!
10 NADH + 2 FADH2 per glucose go to ETC → 30 + 4 = 34 ATP from oxidative phosphorylation.
!
4 ATP from substrate-level phosphorylation: 2 in glycolysis (steps 7 and 10) + 2 in Krebs cycle (step 5, succinyl-CoA → succinate).
!
34 (ETC) + 4 (substrate-level) = 38 ATP per glucose.
Try this
Toggle through 5 substrates (carbohydrate, fat, protein, organic acid, anaerobic). See the equation, RQ calculation, and where each substrate sits on the RQ scale (0 to ∞).
Toggle between substrates (carbohydrate, fat, protein, organic acid, anaerobic). Each gives a different RQ. RQ = CO2 produced / O2 consumed.
RQ scale
Carbohydrates
Example: Glucose (C6H12O6)
C6H12O6 + 6 O2 → 6 CO2 + 6 H2O
Glucose is partially oxygenated already. The CO2 produced equals the O2 consumed: RQ = 1.0. All carbohydrates respired aerobically have RQ = 1.0.
CO2 produced
6
O2 consumed
6
RQ
1.0
6 / 6 = 1.0
RQ Formula
RQ = volume of CO2 evolved / volume of O2 consumed
NEET RQ values quick reference
Carbohydrates (glucose)
1.0
Fats (tripalmitin)
~0.7
Proteins
~0.9
Organic acids (malic acid)
~1.33 (>1)
Oxalic acid
4.0 (highest)
Anaerobic respiration
Infinity
Germinating fatty seeds
0.7 to <1
Germinating starchy seeds
~1.0
NEET key facts
!
RQ = CO2 produced / O2 consumed. Use volumes (or moles) of gases.
!
Carbohydrate RQ = 1.0 (CO2 = O2). Fat RQ ≈ 0.7 (less CO2 per O2). Protein RQ ≈ 0.9.
!
Organic acid RQ > 1.0 because the molecule is already highly oxygenated. Oxalic acid: RQ = 4.
!
Anaerobic respiration RQ = infinity because O2 consumed = 0 (denominator is zero).
!
Pure RQ measurement: use Ganong's respirometer or Kühne's tube. Substrate is in a closed chamber with KOH (absorbs CO2) or without KOH; the difference gives O2 consumption.
Try this
Click each respiratory intermediate (acetyl CoA, alpha-KG, OAA, succinyl CoA, pyruvate, glucose-6-P) to see what biomolecules it can build (anabolic) and where it goes in respiration (catabolic).
Click any respiratory intermediate to see what it can be USED to build (anabolic role) AND how it goes DOWN the catabolic pathway. This dual role is why respiration is amphibolic.
Acetyl CoA (2C)
Where it comes from: Link reaction (also from beta-oxidation of fats)
↓ CATABOLIC role (energy release)
Combines with OAA to form citrate; enters Krebs cycle.
↑ ANABOLIC role (biosynthesis precursor)
• Fatty acids (via fatty acid synthase)
• Cholesterol and steroid hormones
• Ketone bodies
• Mevalonate (for terpene synthesis in plants)
Acetyl CoA is the central metabolic hub. It is the entry point to Krebs cycle (catabolism) AND the building block for all fatty acids and isoprenoids (anabolism). When the cell has excess acetyl CoA (after a meal), it builds fat. When short on energy, it runs Krebs.
What does "amphibolic" mean?
Amphi- = "both" or "of two kinds" + -bolic = relating to a metabolic pathway.
A pathway is amphibolic if it serves both catabolic functions (breakdown for energy) and anabolic functions (precursors for biosynthesis).
The respiratory pathway is amphibolic because:
Catabolic: glucose → 6 CO2 + H2O + 38 ATP (energy release)
Anabolic: intermediates branch off to make amino acids, fatty acids, nucleotides, chlorophyll, heme
NEET key facts
!
Respiration is AMPHIBOLIC: serves both catabolic (breakdown) AND anabolic (biosynthesis) functions.
!
Acetyl CoA is the central hub: it is the entry to Krebs (energy) AND the precursor to fatty acids, sterols, and isoprenoids.
!
Alpha-ketoglutarate → glutamate (and arginine, proline, glutamine). In plants, glutamate is also the precursor for chlorophyll.
!
OAA → aspartate (and lysine, threonine, methionine). Also precursor to pyrimidine bases of DNA / RNA.
!
Succinyl CoA → porphyrins (heme in hemoglobin / cytochromes; chlorophyll in plants).
!
Pyruvate → alanine (transamination). Glucose-6-P → ribose-5-P (for nucleotides) via pentose phosphate pathway.
Try this
12-question scored quiz covering glycolysis, link reaction, Krebs cycle, ETC, fermentation, ATP yield, RQ, and amphibolic pathway.
One question at a time. Pick an option, see the explanation, then move to the next.
The net production of ATP per glucose molecule in glycolysis is:
A. 1 ATP
B. 2 ATP
C. 4 ATP
D. 8 ATP
Drag, slide and recompute on the next chapter's widgets.
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